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Registry of MDAnalysis Toolkits (MDAKits)
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The MDAKit registry contains a list of all MDAKits which have been added to this repository. The aim of this registry is to:
  1. Inform members of the community about existing MDAKits
  2. Provide sufficient details to allow others to use and potentially participate in the development of the MDAKits
  3. Provide information about the current state of the MDAKits and how they interact with the latest versions of MDAnalysis

Each of the MDAKits in the following table links to a page with more details about what the MDAKits do, how they can be installed and how to participate in their development.

.. list-table:: List of registered MDAKits
    :class: datatable
    :widths: 25 25 25 25
    :header-rows: 1

    * - MDAKit
      - Keywords
      - Authors
      - CI badges
    * - :ref:`mda-tui`
      - transformations, TUI
      - `mda-tui authors`_
      - |mda-tui_latest| |mda-tui_develop|
    * - :ref:`lipyds`
      - lipids, membranes
      - lilyminium
      - |lipyds_latest| |lipyds_develop|
    * - :ref:`mdacli`
      - command line interface, molecular-dynamics
      - `mdacli authors`_
      - |mdacli_latest| |mdacli_develop|
    * - :ref:`mdachecker`
      - structure analysis, conformation checks
      - IAlibay
      - |mdachecker_latest| |mdachecker_develop|
    * - :ref:`solvation-analysis`
      - chemistry, electrolytes, solvation structure
      - orionarcher, hmacdope, laurlee, IAlibay
      - |solvation-analysis_latest| |solvation-analysis_develop|
    * - :ref:`mdahole2`
      - pores, ion channels, transporters, HOLE
      - `mdahole2 authors`_
      - |mdahole2_latest| |mdahole2_develop|
    * - :ref:`waterdynamics`
      - water, hydrogenbonds, MSD
      - `waterdynamics authors`_
      - |waterdynamics_latest| |waterdynamics_develop|
    * - :ref:`ProLIF`
      - drug-design, cheminformatics, molecular-dynamics
      - Cédric Bouysset
      - |ProLIF_latest| |ProLIF_develop|
    * - :ref:`membrane-curvature`
      - membranes, curvature, molecular dynamics
      - `membrane-curvature authors`_
      - |membrane-curvature_latest| |membrane-curvature_develop|
    * - :ref:`openmm-mdanalysis-reporter`
      - OpenMM, Reporters
      - `openmm-mdanalysis-reporter authors`_
      - |openmm-mdanalysis-reporter_latest| |openmm-mdanalysis-reporter_develop|
    * - :ref:`PathSimAnalysis`
      - similarity, paths, metrics
      - `PathSimAnalysis authors`_
      - |PathSimAnalysis_latest| |PathSimAnalysis_develop|
    * - :ref:`mdakit-sasa`
      - SASA, FreeSASA, ShrakeRupley, LeeRichards
      - `mdakit-sasa authors`_
      - |mdakit-sasa_latest| |mdakit-sasa_develop|
    * - :ref:`transport-analysis`
      - transport properties, molecular dynamics
      - `transport-analysis authors`_
      - |transport-analysis_latest| |transport-analysis_develop|
    * - :ref:`maicos`
      - Molecular Dynamics, Confined Systems
      - `maicos authors`_
      - |maicos_latest| |maicos_develop|
    * - :ref:`mdaencore`
      - ensemble, similarity, covariance, PCA
      - `mdaencore authors`_
      - |mdaencore_latest| |mdaencore_develop|
    * - :ref:`propkatraj`
      - pKa, protein
      - `propkatraj authors`_
      - |propkatraj_latest| |propkatraj_develop|


.. toctree::
   :maxdepth: 1
   :hidden:

   mda-tui
   lipyds
   mdacli
   mdachecker
   solvation-analysis
   mdahole2
   waterdynamics
   ProLIF
   membrane-curvature
   openmm-mdanalysis-reporter
   PathSimAnalysis
   mdakit-sasa
   transport-analysis
   maicos
   mdaencore
   propkatraj


.. _`mda-tui authors`:
   https://github.com/p-j-smith/mda-tui/blob/main/AUTHORS.md

.. |mda-tui_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
   :alt: mda-tui develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. |mda-tui_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
   :alt: mda-tui develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. |lipyds_latest| image:: https://img.shields.io/badge/latest-unavailable-inactive.svg
   :alt: lipyds develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. |lipyds_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
   :alt: lipyds develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. _`mdacli authors`:
   https://github.com/MDAnalysis/mdacli/blob/main/docs/AUTHORS.rst

.. |mdacli_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
   :alt: mdacli develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. |mdacli_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
   :alt: mdacli develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. |mdachecker_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
   :alt: mdachecker develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. |mdachecker_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
   :alt: mdachecker develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. |solvation-analysis_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
   :alt: solvation-analysis develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. |solvation-analysis_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
   :alt: solvation-analysis develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. _`mdahole2 authors`:
   https://github.com/MDAnalysis/mdahole2/blob/main/AUTHORS.md

.. |mdahole2_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
   :alt: mdahole2 develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. |mdahole2_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
   :alt: mdahole2 develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. _`waterdynamics authors`:
   https://github.com/MDAnalysis/waterdynamics/blob/main/AUTHORS.md

.. |waterdynamics_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
   :alt: waterdynamics develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. |waterdynamics_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
   :alt: waterdynamics develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. |ProLIF_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
   :alt: ProLIF develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. |ProLIF_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
   :alt: ProLIF develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. _`membrane-curvature authors`:
   https://github.com/MDAnalysis/membrane-curvature/blob/main/AUTHORS

.. |membrane-curvature_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
   :alt: membrane-curvature develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. |membrane-curvature_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
   :alt: membrane-curvature develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. _`openmm-mdanalysis-reporter authors`:
   https://github.com/sef43/openmm-mdanalysis-reporter/blob/main/AUTHORS.md

.. |openmm-mdanalysis-reporter_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
   :alt: openmm-mdanalysis-reporter develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. |openmm-mdanalysis-reporter_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
   :alt: openmm-mdanalysis-reporter develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. _`PathSimAnalysis authors`:
   https://github.com/MDAnalysis/PathSimAnalysis/blob/main/AUTHORS.md

.. |PathSimAnalysis_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
   :alt: PathSimAnalysis develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. |PathSimAnalysis_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
   :alt: PathSimAnalysis develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. _`mdakit-sasa authors`:
   https://github.com/pegerto/mdakit_sasa/blob/main/AUTHORS.md

.. |mdakit-sasa_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
   :alt: mdakit-sasa develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. |mdakit-sasa_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
   :alt: mdakit-sasa develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. _`transport-analysis authors`:
   https://github.com/MDAnalysis/transport-analysis/blob/main/AUTHORS.md

.. |transport-analysis_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
   :alt: transport-analysis develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. |transport-analysis_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
   :alt: transport-analysis develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. _`maicos authors`:
   https://gitlab.com/maicos-devel/maicos/-/blob/main/AUTHORS.rst

.. |maicos_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
   :alt: maicos develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. |maicos_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
   :alt: maicos develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. _`mdaencore authors`:
   https://github.com/MDAnalysis/mdaencore/blob/main/AUTHORS.md

.. |mdaencore_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
   :alt: mdaencore develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. |mdaencore_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
   :alt: mdaencore develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. _`propkatraj authors`:
   https://github.com/Becksteinlab/propkatraj/blob/main/AUTHORS

.. |propkatraj_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
   :alt: propkatraj develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions

.. |propkatraj_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
   :alt: propkatraj develop CI status
   :target: https://github.com/MDAnalysis/MDAKits/actions